I ended up using tiny media manager to move and rename all of my files. Fixes that issue.

It took me awhile to figure out the correct setup to get Sonarr, qbittorrent, and Jellyfin all to play nicely together, but once you get it figured out, it transparently addresses the problems of folder structure and allowing you to keep seeding content.

I had the same issue as you, initially, where I had to do a ton of library maintenance in Jellyfin. But since using Sonarr to monitor and import media from torrents to a structured media library, Jellyfin has been pretty hands-off

Well if you want to continue with torrents, use Sonarr configured to torrent and configure it to move files by linking instead of moving

But I would HIGHLY recommend you switch to usenet for your source. You do have to have one or a couple cheap (talking 9-20$ a YEAR) indexer subscriptions and a subscription to a usenet provider itself (7-30$/month) but it's SO much faster, easier and you don't need to worry about seeding.

I have the same problem. There is a Lemmy community for Jellyfin. Maybe we need to ask there. I run both right now. Plex and Jellyfin. I use Jellyfin whenever I can but still have plex for that issue

I think it's a common practice to keep the original file in the torrent folder and create a hard link with proper naming in the media folder.

Plex is a lot better at grabbing a pack of loosely organized files and understanding episode structure without renaming or moving files, which is great for continuing to seed files that are in the library.

You may want to look into the *arr suite. Sonarr for managing TV show downloads, Radarr for managing movie downloads, Jellyseerr for managing media requests, Prowlarr for managing torrent/usenet indexers (search engines), Cleanuparr for automatic download management, and Huntarr for automatic downloads.

I haven’t seen anyone discuss this, so maybe I’m doing something wrong?

The go-to these days is to use hardlinks, which will allow you to have the files show up in two places at once. Sort of like a shortcut, but it actually shows the true file instead of simply pointing to a different file location. One stays in your torrent’s location for seeding, and a second hardlink is created in your media folder, with proper naming structure for Plex/Jellyfin to find. The *arr suite automates that process. It tracks your downloads, and automatically creates Plex/Jellyfin file names in the corresponding library folders when the download is completed.

It’s the best in every sense:

• You can continue seeding.
• You don’t need to keep multiple copies of the same file, because the hardlink in your library folder is pointing to the same file as the torrent. So it doesn’t take up twice as much space on your drive.
• You get proper naming conventions for your media discovery.
• You don’t need to manually manage your library.

The big downside to hardlinks is that they can’t be used across drives or partitions. The hardlink can only point to a file on the same drive. So if your torrent download folder is on a different drive than your library folders, you can’t use hardlinks.

if the hard links everyone else is mentionining aren't feasible for you, take a look at tvnamer. I've found it works quite well for scanning and renaming files, it even supports custom renaming pattern and you can pass it a tvdb series id if it doesn't automatically detect your series.

I use it cause all my torrenting is done on a different machine, and those files get transferred over to my server. so the arr suite isn't the best solution for me

I got around that by being a bad pirate. If I've watched it, chances are I'm nuking it in a few days from my download drive to make room for something else.