Super Mario RPG 2 - not Paper Mario, not Mario and Luigi. Super Mario RPG is unique in its graphical style and gameplay.
Super Mario Galaxy 3 - playing with gravity is so fun in Galaxy. It would be great with updated physics engine and more complex worlds.
Chrono Trigger 2 - not Chrono Cross. I want the original cast, original art style (RIP Akira Toriyama), beautiful pixel art, and the combat without the unneccessary additions in Chrono Cross.
Final Fantasy main series AAA with turn-based combat
Dragon Quest XII - annouced years ago but still without a release date. I hope SquireEnix won't mess it up, but I know they will.