The very short answer is that gas pressure is mostly proportional to the amount of particles per volume.
So a balloon filled with helium has X particles per cubic cm, while the air around it has the same amount (instead of getting crushed). But because helium is a lot lighter per particle than standard air, this makes the balloon lighter than air, and like trying to push an air-filled balloon underwater, this helium-filled balloon floats to the higher layers of air, until other smaller forces also start to matter and the balance is restored.
So a "vacuum-filled" balloon has nothing to give counter-pressure, but a balloon filled with helium definitely does.