The biggest issue that I ran into when I was using NTFS drives with Linux was caused by unclean drive dismounts. After power outages, forced shutdowns, or manually pulled drives (I am the problem sometimes), the NTFS drive would sometimes fail to mount properly unless I connected it to a Windows computer and scanned the drive for errors first. Not the end of the world if you have backups and a Windows computer handy, but pretty terrible if you don't have both.
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