I use a 3D CAD software that once you switch to 3D mode, it makes things partially transparent, but it does so by scaling the opacity of the entire window. The end result is that transparent parts look correct when you have a black desktop background, but otherwise you'll see what's on the window behind it or the desktop background. Same issue when you get gaps between two sides or curves. I think no one noticed because they would usually launch it from a terminal, so they always had black backgrounds.
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