Sorry if I use the wrong English terms! I think you are right :) With system I refered to the literal computer system the file is saved on. I'm not a dev of one of those tools but I know several maintainers and developers that's why I'm a bit sensitive there! Thats why I (baldy apparently, apologies!) tried to focus on the developer point of view and ignored the whole cost/benefit aspect which you described very well - thank you for that!
Back to my point re/ local security because I feel this is the only one where I see a fundamentally different assessment between us: (Fontext: access an unencrypted file on my machine): I'm not aware of a mechanism to read (unencrypted or not) files on a host without a preceding incident. How else could your files be acessed? I don't understand how I might have this backwards.
You're completely right if course that there are a lot of tools out there one could use - but it would be on the developer to implement support for those. If you support one you can be damn sure users shout for "I want to use Y". And then you would still need a Fallback for anyone not willing to install a supported third party tools.